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We explore the adoption of cloud-native tools and principles to forge flexible and scalable infrastructures, aimed at supporting analysis frameworks being developed for the ATLAS experiment in the High Luminosity Large Hadron Collider (HL-LHC) era. The project culminated in the creation of a federated platform, integrating Kubernetes clusters from various providers such as Tier-2 centers, Tier-3 centers, and from the IRIS-HEP Scalable Systems Laboratory, a National Science Foundation project. A unified interface was provided to streamline the management and scaling of containerized applications. Enhanced system scalability was achieved through integration with analysis facilities, enabling spillover of Jupyter/Binder notebooks and Dask workers to Tier-2 resources. We investigated flexible deployment options for a “stretched” (over the wide area network) cluster pattern, including a centralized “lights out management” model, remote administration of Kubernetes services, and a fully autonomous site-managed cluster approach, to accommodate varied operational and security requirements. The platform demonstrated its efficacy in multi-cluster demonstrators for low-latency analyses and advanced workflows with tools such as Coffea, ServiceX, Uproot and Dask, and RDataFrame, illustrating its ability to support various processing frameworks. The project also resulted in a robust user training infrastructure for ATLAS software and computing on-boarding events. 

The ATLAS experiment is currently developing columnar analysis frameworks which leverage the Python data science ecosystem. We describe the construction and operation of the infrastructure necessary to support demonstrations of these frameworks, with a focus on those from IRIS-HEP. One such demonstrator aims to process the compact ATLAS data format PHYSLITE at rates exceeding 200 Gbps. Various access configurations and setups on different sites are explored, including direct access to a dCache storage system via Xrootd, the use of ServiceX, and the use of multiple XCache servers equipped with NVMe storage devices. Integral to this study was the analysis of network traffic and bottlenecks, worker node scheduling and disk configurations, and the performance of an S3 object store. The system’s overall performance was measured as the number of processing cores scaled to over 2,000 and the volume of data accessed in an interactive session approached 200 TB. The presentation will delve into the operational details and findings related to the physical infrastructure that underpins these demonstrators. 

Cells self-organize into functional, ordered structures during tissue morphogenesis, a process that is evocative of colloidal self-assembly into engineered soft materials. Understanding how intercellular mechanical interactions may drive the formation of ordered and functional multicellular structures is important in developmental biology and tissue engineering. Here, by combining an agent-based model for contractile cells on elastic substrates with endothelial cell culture experiments, we show that substrate deformation–mediated mechanical interactions between cells can cluster and align them into branched networks. Motivated by the structure and function of vasculogenic networks, we predict how measures of network connectivity like percolation probability and fractal dimension as well as local morphological features including junctions, branches, and rings depend on cell contractility and density and on substrate elastic properties including stiffness and compressibility. We predict and confirm with experiments that cell network formation is substrate stiffness dependent, being optimal at intermediate stiffness. We also show the agreement between experimental data and predicted cell cluster types by mapping a combined phase diagram in cell density substrate stiffness. Overall, we show that long-range, mechanical interactions provide an optimal and general strategy for multicellular self-organization, leading to more robust and efficient realizations of space-spanning networks than through just local intercellular interactions.